If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ), 'gf_id' => 'HOM05D000913', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000913' ), 'data_identifier' => 'HOM05D000913', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000913', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '657', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30270' => 'bna', 'A03p35370' => 'bna', 'A03p41620' => 'bna', 'A03p52020' => 'bna', 'A05p28790' => 'bna', 'A05p40590' => 'bna', 'A06p39280' => 'bna', 'Aa31LG5G18190' => 'aar', 'Aa31LG9G9360' => 'aar', 'Aa31LG9G9400' => 'aar', 'Actinidia05030' => 'ach', 'Actinidia12346' => 'ach', 'Actinidia12348' => 'ach', 'Ah.12g065180' => 'amhyb', 'AL3G18960' => 'aly', 'AL3G33880' => 'aly', 'AL6G48640' => 'aly', 'AL8G14310' => 'aly', 'AL8G21010' => 'aly', 'Aqoxy4G01736' => 'aox', 'Aqoxy4G01739' => 'aox', 'Aqoxy4G01742' => 'aox', 'Aqoxy4G01747' => 'aox', 'Aqoxy4G01748' => 'aox', 'Aqoxy4G01749' => 'aox', 'Aqoxy4G01751' => 'aox', 'Aqoxy5G01407' => 'aox', 'Aqoxy5G03820' => 'aox', 'Aqoxy7G02044' => 'aox', 'Aqoxy7G02045' => 'aox', 'arahy.Tifrunner.gnm1.ann1.29G5I6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.483BUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W1Y21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2ZTLF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6KND3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2IRB4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EN7GHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE2NQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRA598' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGM1GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IVAP43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J75ZHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV1GEI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8UWAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M08FD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RGK4QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S87WCM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U821IZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.US6G5L' => 'arhy', 'AT3G07600' => 'ath', 'AT3G20180' => 'ath', 'AT4G05030' => 'ath', 'AT5G48290' => 'ath', 'ATR0751G155' => 'atr', 'ATR0751G174' => 'atr', 'ATR0751G195' => 'atr', 'Atru.chr1.4051' => 'acertr', 'Atru.chr1.4053' => 'acertr', 'Atru.chr1.4055' => 'acertr', 'Atru.chr2.3657' => 'acertr', 'Atru.chr2.3866' => 'acertr', 'Atru.chr6.3442' => 'acertr', 'Atru.chr6.3443' => 'acertr', 'Atru.chr6.3444' => 'acertr', 'AUR62026813' => 'cqu', 'AUR62037240' => 'cqu', 'BcaB01g02565' => 'bca', 'BcaB03g14690' => 'bca', 'BcaB04g21280' => 'bca', 'BcaB06g26091' => 'bca', 'BcaC01g04273' => 'bca', 'BcaC01g06654' => 'bca', 'BcaC05g30224' => 'bca', 'BcaC06g30813' => 'bca', 'BcaC06g31341' => 'bca', 'BolC3t15966H' => 'bol', 'BolC3t16566H' => 'bol', 'BolC5t33142H' => 'bol', 'BolC7t44424H' => 'bol', 'BraA03t12211Z' => 'bra', 'BraA03t12715Z' => 'bra', 'BraA05t21756Z' => 'bra', 'BraA05t22790Z' => 'bra', 'BraA06t26842Z' => 'bra', 'C03p36530' => 'bna', 'C03p42980' => 'bna', 'C05p44200' => 'bna', 'C07p39050' => 'bna', 'CAN.G585.20' => 'can', 'CANSAT11G0550' => 'cansat', 'CANSAT11G1322' => 'cansat', 'CANSAT56G2010' => 'cansat', 'CANSAT56G3334' => 'cansat', 'CANSAT64G0066' => 'cansat', 'CANSAT64G0767' => 'cansat', 'CARHR082300' => 'chi', 'CARHR095770' => 'chi', 'CARHR184000' => 'chi', 'CARHR252500' => 'chi', 'Carub.0003s0717' => 'cru', 'Carub.0003s2011' => 'cru', 'Carub.0006s3300' => 'cru', 'Carub.0008s0784' => 'cru', 'Ca_06376_v3' => 'car', 'Ca_27958_v3' => 'car', 'Cc02_g37590' => 'ccan', 'Cc05_g09750' => 'ccan', 'Cc05_g09760' => 'ccan', 'Cc05_g09770' => 'ccan', 'Cfa004620' => 'cfa', 'Cfa014195' => 'cfa', 'Cfa014196' => 'cfa', 'Cfa014197' => 'cfa', 'Cfa014198' => 'cfa', 'Cfa016930' => 'cfa', 'Cfa018626' => 'cfa', 'Ciclev10010297m.g' => 'ccl', 'Ciclev10010525m.g' => 'ccl', 'Ciclev10010732m.g' => 'ccl', 'Ciclev10017001m.g' => 'ccl', 'Ciclev10017259m.g' => 'ccl', 'Ciclev10018068m.g' => 'ccl', 'CiPaw.01G191500' => 'cil', 'CiPaw.03G195800' => 'cil', 'CiPaw.03G195900' => 'cil', 'CiPaw.09G111300' => 'cil', 'CiPaw.09G111400' => 'cil', 'CiPaw.09G111500' => 'cil', 'CiPaw.10G022600' => 'cil', 'CiPaw.10G022800' => 'cil', 'CiPaw.10G022900' => 'cil', 'CiPaw.10G023100' => 'cil', 'CiPaw.11G201200' => 'cil', 'CiPaw.11G208300' => 'cil', 'CiPaw.14G082800' => 'cil', 'CiPaw.16G094600' => 'cil', 'CiPaw.16G094900' => 'cil', 'ClCG02G010880' => 'cla', 'COL.COLO4_07756' => 'col', 'COL.COLO4_09796' => 'col', 'COL.COLO4_09797' => 'col', 'COL.COLO4_19668' => 'col', 'COL.COLO4_19669' => 'col', 'COL.COLO4_33258' => 'col', 'COL.COLO4_33260' => 'col', 'Cpa.g.sc12.187' => 'cpa', 'Cpa.g.sc12.188' => 'cpa', 'Cpa.g.sc12.95' => 'cpa', 'Cpa.g.sc136.67' => 'cpa', 'Cpa.g.sc136.68' => 'cpa', 'CsaV3_6G009780' => 'csa', 'CSS0009010' => 'camsi', 'CSS0020217' => 'camsi', 'CSS0022781' => 'camsi', 'CSS0028038' => 'camsi', 'CSS0038172' => 'camsi', 'DCAR_008754' => 'dca', 'DCAR_008755' => 'dca', 'DCAR_013775' => 'dca', 'DCAR_015686' => 'dca', 'DCAR_016629' => 'dca', 'DCAR_017593' => 'dca', 'DCAR_017594' => 'dca', 'DCAR_019657' => 'dca', 'DCAR_019659' => 'dca', 'DCAR_019660' => 'dca', 'DCAR_021079' => 'dca', 'DCAR_021080' => 'dca', 'Dinv03822' => 'din', 'Dinv03824' => 'din', 'Dinv05124' => 'din', 'Dinv05335' => 'din', 'Dinv05336' => 'din', 'Dinv05338' => 'din', 'Dinv10316' => 'din', 'Dinv16085' => 'din', 'Dinv21327' => 'din', 'Duzib133G0202' => 'dzi', 'Duzib138G0027' => 'dzi', 'Duzib138G1006' => 'dzi', 'Duzib138G1058' => 'dzi', 'Duzib138G1373' => 'dzi', 'Duzib138G1828' => 'dzi', 'Duzib150G0569' => 'dzi', 'Duzib170G1090' => 'dzi', 'Duzib211G0303' => 'dzi', 'Duzib213G0455' => 'dzi', 'Duzib213G0636' => 'dzi', 'Duzib213G0838' => 'dzi', 'Duzib268G0261' => 'dzi', 'Duzib268G0517' => 'dzi', 'Duzib268G1294' => 'dzi', 'Duzib268G1311' => 'dzi', 'ECA236G0352' => 'eca', 'ECA236G3674' => 'eca', 'ECA236G4318' => 'eca', 'EL10Ac2g02868' => 'bvu', 'Eucgr.A00960' => 'egr', 'Eucgr.A00961' => 'egr', 'Eucgr.A00963' => 'egr', 'Eucgr.A00965' => 'egr', 'Eucgr.E04208' => 'egr', 'Eucgr.E04213' => 'egr', 'Eucgr.F03666' => 'egr', 'Eucgr.H01538' => 'egr', 'Eucgr.K01374' => 'egr', 'Eucgr.K01375' => 'egr', 'Eucgr.K01377' => 'egr', 'Eucgr.K01379' => 'egr', 'Eucgr.K01380' => 'egr', 'Eucgr.L01980' => 'egr', 'Eucgr.L03723' => 'egr', 'FAN02G3220' => 'fan', 'FAN05G2837' => 'fan', 'FAN09G0650' => 'fan', 'FAN11G3382' => 'fan', 'FAN14G2134' => 'fan', 'FAN16G0947' => 'fan', 'FAN16G2023' => 'fan', 'FAN16G2117' => 'fan', 'FAN16G3426' => 'fan', 'FAN21G0520' => 'fan', 'FAN21G1287' => 'fan', 'FAN21G2856' => 'fan', 'FAN21G3003' => 'fan', 'FAN25G0550' => 'fan', 'FAN25G1205' => 'fan', 'FAN25G2144' => 'fan', 'FAN25G3293' => 'fan', 'FvH4_3g24080' => 'fve', 'FvH4_3g24100' => 'fve', 'FvH4_3g42050' => 'fve', 'FvH4_3g42060' => 'fve', 'FvH4_3g42070' => 'fve', 'FvH4_3g42071' => 'fve', 'FvH4_3g42080' => 'fve', 'FvH4_3g42090' => 'fve', 'FvH4_3g42100' => 'fve', 'FvH4_3g42110' => 'fve', 'FvH4_6g40280' => 'fve', 'Glyma.02G298100' => 'gma', 'Glyma.07G098500' => 'gma', 'Glyma.09G016400' => 'gma', 'Glyma.09G179800' => 'gma', 'Glyma.09G179900' => 'gma', 'Glyma.13G010600' => 'gma', 'Glyma.14G051600' => 'gma', 'Glyma.15G122200' => 'gma', 'Gohir.A04G003500' => 'ghi', 'Gohir.A04G003600' => 'ghi', 'Gohir.A04G003700' => 'ghi', 'Gohir.A04G008700' => 'ghi', 'Gohir.A04G008833' => 'ghi', 'Gohir.A04G009400' => 'ghi', 'Gohir.A07G162700' => 'ghi', 'Gohir.A08G009300' => 'ghi', 'Gohir.A11G147300' => 'ghi', 'Gohir.A11G147350' => 'ghi', 'Gohir.A12G046900' => 'ghi', 'Gohir.D05G378500' => 'ghi', 'Gohir.D05G378800' => 'ghi', 'Gohir.D05G386200' => 'ghi', 'Gohir.D07G169300' => 'ghi', 'Gohir.D08G019300' => 'ghi', 'Gohir.D08G019400' => 'ghi', 'Gohir.D11G154000' => 'ghi', 'Gohir.D11G154200' => 'ghi', 'Gohir.D12G045900' => 'ghi', 'Gorai.001G189300' => 'gra', 'Gorai.004G013800' => 'gra', 'Gorai.004G013900' => 'gra', 'Gorai.007G164100' => 'gra', 'Gorai.007G164300' => 'gra', 'Gorai.008G048500' => 'gra', 'Gorai.009G438600' => 'gra', 'Gorai.009G446400' => 'gra', 'Gorai.009G452700' => 'gra', 'Gorai.009G452900' => 'gra', 'Gorai.N012600' => 'gra', 'GSVIVG01003316001' => 'vvi', 'GSVIVG01014795001' => 'vvi', 'GSVIVG01014798001' => 'vvi', 'GSVIVG01014802001' => 'vvi', 'GSVIVG01026843001' => 'vvi', 'GSVIVG01030135001' => 'vvi', 'GSVIVG01030137001' => 'vvi', 'HanXRQChr01g0023431' => 'han', 'HanXRQChr01g0023451' => 'han', 'HanXRQChr04g0126321' => 'han', 'HanXRQChr04g0126331' => 'han', 'HanXRQChr11g0329551' => 'han', 'HanXRQChr11g0329801' => 'han', 'HanXRQChr13g0408001' => 'han', 'HanXRQChr14g0430241' => 'han', 'Haze_09791' => 'cav', 'Haze_09793' => 'cav', 'Haze_09880' => 'cav', 'Haze_09888' => 'cav', 'Haze_10216' => 'cav', 'Haze_12577' => 'cav', 'Haze_12579' => 'cav', 'Haze_23588' => 'cav', 'Haze_23590' => 'cav', 'Hma1.2p1_0048F.1_g028140' => 'hma', 'Hma1.2p1_0193F.1_g084060' => 'hma', 'Hund22998' => 'sun', 'Hund25407' => 'sun', 'Hund29698' => 'sun', 'Hund29699' => 'sun', 'Lalb_Chr04g0247951' => 'lal', 'Lalb_Chr04g0250241' => 'lal', 'Lalb_Chr18g0057461' => 'lal', 'Lalb_Chr22g0353251' => 'lal', 'Lalb_Chr22g0353261' => 'lal', 'Lj2g0027181' => 'lja', 'Lj6g0007781' => 'lja', 'LjContig00029g0010664' => 'lja', 'LjContig00029g0025163' => 'lja', 'LjContig00272g0015676' => 'lja', 'Lsat_1_v5_gn_3_91360' => 'lsa', 'Lsat_1_v5_gn_7_98101' => 'lsa', 'Lsat_1_v5_gn_7_98121' => 'lsa', 'Lsat_1_v5_gn_7_98640' => 'lsa', 'Lsat_1_v5_gn_7_98660' => 'lsa', 'Lsat_1_v5_gn_7_98700' => 'lsa', 'Lsat_1_v5_gn_7_98720' => 'lsa', 'Lsat_1_v5_gn_7_98760' => 'lsa', 'Lsat_1_v5_gn_7_98820' => 'lsa', 'Lsat_1_v5_gn_9_91041' => 'lsa', 'Manes.03G137300' => 'mes', 'Manes.11G055424' => 'mes', 'Manes.11G060024' => 'mes', 'Manes.11G060239' => 'mes', 'Manes.12G067600' => 'mes', 'Manes.12G067700' => 'mes', 'Manes.13G059300' => 'mes', 'Manes.13G059333' => 'mes', 'Manes.13G059366' => 'mes', 'Manes.13G059400' => 'mes', 'Manes.13G059500' => 'mes', 'MBI12_g26217_MAGBIO' => 'mbi', 'MBI12_g45219_MAGBIO' => 'mbi', 'MBI14_g15410_MAGBIO' => 'mbi', 'MBI14_g16762_MAGBIO' => 'mbi', 'MBI14_g16764_MAGBIO' => 'mbi', 'MBI14_g16765_MAGBIO' => 'mbi', 'MBI14_g16770_MAGBIO' => 'mbi', 'MBI14_g17948_MAGBIO' => 'mbi', 'MBI14_g17949_MAGBIO' => 'mbi', 'MBI14_g17952_MAGBIO' => 'mbi', 'MBI14_g21552_MAGBIO' => 'mbi', 'MBI14_g21902_MAGBIO' => 'mbi', 'MBI14_g37420_MAGBIO' => 'mbi', 'MBI14_g39442_MAGBIO' => 'mbi', 'MBI14_g42478_MAGBIO' => 'mbi', 'MBI14_g43020_MAGBIO' => 'mbi', 'MBI14_g44232_MAGBIO' => 'mbi', 'MBI14_g46945_MAGBIO' => 'mbi', 'MBI14_g47818_MAGBIO' => 'mbi', 'MBI14_g48110_MAGBIO' => 'mbi', 'MBI15_g37255_MAGBIO' => 'mbi', 'MBI15_g38739_MAGBIO' => 'mbi', 'MBI16_g31487_MAGBIO' => 'mbi', 'MBI16_g31488_MAGBIO' => 'mbi', 'MBI16_g33216_MAGBIO' => 'mbi', 'MBI18_g31613_MAGBIO' => 'mbi', 'MD03G1038100' => 'mdo', 'MD03G1038400' => 'mdo', 'MD03G1038600' => 'mdo', 'MD03G1038900' => 'mdo', 'MD03G1039000' => 'mdo', 'MD03G1039100' => 'mdo', 'MD03G1188500' => 'mdo', 'MD09G1133200' => 'mdo', 'MD10G1233100' => 'mdo', 'MD10G1233300' => 'mdo', 'MD10G1341200' => 'mdo', 'MD11G1039200' => 'mdo', 'MD11G1039300' => 'mdo', 'MD11G1204400' => 'mdo', 'MD11G1204600' => 'mdo', 'Medtr0635s0010' => 'mtr', 'Medtr1g041690' => 'mtr', 'Medtr2g027600' => 'mtr', 'Medtr3g082210' => 'mtr', 'Medtr3g082250' => 'mtr', 'Medtr3g082260' => 'mtr', 'Medtr5g007070' => 'mtr', 'Medtr5g084660' => 'mtr', 'Medtr5g094730' => 'mtr', 'Medtr6g082180' => 'mtr', 'Medtr6g082190' => 'mtr', 'Medtr6g082280' => 'mtr', 'Medtr6g082330' => 'mtr', 'MELO3C013462.2' => 'cme', 'Migut.E01774' => 'egut', 'Migut.M00531' => 'egut', 'Migut.M00555' => 'egut', 'Migut.M00556' => 'egut', 'Migut.M01469' => 'egut', 'Migut.M01600' => 'egut', 'MSTRG.15029' => 'ama', 'MSTRG.15032' => 'ama', 'MSTRG.15033' => 'ama', 'Nitab4.5_0000134g0080' => 'nta', 'Nitab4.5_0000163g0290' => 'nta', 'Nitab4.5_0001232g0090' => 'nta', 'Nitab4.5_0002251g0110' => 'nta', 'Nitab4.5_0002517g0020' => 'nta', 'Nitab4.5_0002919g0010' => 'nta', 'Nitab4.5_0003051g0020' => 'nta', 'Nitab4.5_0003104g0010' => 'nta', 'Nitab4.5_0006767g0010' => 'nta', 'Nitab4.5_0006767g0020' => 'nta', 'Nitab4.5_0008506g0020' => 'nta', 'Nn1g06060' => 'nnu', 'Nn1g07601' => 'nnu', 'Nn1g07704' => 'nnu', 'Nn5g28777' => 'nnu', 'Nn5g28779' => 'nnu', 'Nn5g28780' => 'nnu', 'Nn5g28781' => 'nnu', 'Nn7g37121' => 'nnu', 'Nn7g37140' => 'nnu', 'Nn7g37142' => 'nnu', 'Nn7g37143' => 'nnu', 'Oeu011532.1' => 'oeu', 'Oeu020046.1' => 'oeu', 'Oeu020047.1' => 'oeu', 'Oeu025980.1' => 'oeu', 'Oeu040052.1' => 'oeu', 'Oeu049436.1' => 'oeu', 'Oeu049439.1' => 'oeu', 'Oeu049442.1' => 'oeu', 'Oeu049446.1' => 'oeu', 'Oeu049450.1' => 'oeu', 'Os02g0582600' => 'osa', 'Os02g0582800' => 'osa', 'Os02g0584700' => 'osa', 'Os02g0584800' => 'osa', 'Os02g0585100' => 'osa', 'Os02g0585200' => 'osa', 'Os04g0464100' => 'osa', 'Os04g0468600' => 'osa', 'Os04g0469000' => 'osa', 'Os04g0469300' => 'osa', 'Os09g0272000' => 'osa', 'Peaxi162Scf00111g00316' => 'pax', 'Peaxi162Scf00111g00319' => 'pax', 'Peaxi162Scf00111g10031' => 'pax', 'Peaxi162Scf00122g02121' => 'pax', 'PGR031G3155' => 'pgr', 'PGR083G0194' => 'pgr', 'PGR083G0507' => 'pgr', 'PGSC0003DMG400007790' => 'stu', 'PGSC0003DMG400017307' => 'stu', 'PGSC0003DMG400017308' => 'stu', 'PGSC0003DMG401029798' => 'stu', 'Phvul.004G153100' => 'pvu', 'Phvul.006G135600' => 'pvu', 'Phvul.008G216200' => 'pvu', 'Phvul.008G275900' => 'pvu', 'Phvul.008G282200' => 'pvu', 'Phvul.008G282300' => 'pvu', 'Phvul.011G163700' => 'pvu', 'Potri.001G378700' => 'ptr', 'Potri.001G468500' => 'ptr', 'Potri.006G001800' => 'ptr', 'Potri.006G001900' => 'ptr', 'Potri.006G002000' => 'ptr', 'Potri.009G048100' => 'ptr', 'Potri.009G048300' => 'ptr', 'Potri.009G048400' => 'ptr', 'Potri.014G171300' => 'ptr', 'Potri.014G171500' => 'ptr', 'Potri.016G002600' => 'ptr', 'Prupe.2G123900' => 'ppe', 'Prupe.3G193500' => 'ppe', 'Prupe.3G193600' => 'ppe', 'Prupe.4G001900' => 'ppe', 'Prupe.4G234700' => 'ppe', 'Prupe.4G234800' => 'ppe', 'Prupe.6G025900' => 'ppe', 'Prupe.6G030200' => 'ppe', 'Prupe.6G030300' => 'ppe', 'Prupe.6G030400' => 'ppe', 'Prupe.6G030500' => 'ppe', 'Prupe.6G030600' => 'ppe', 'Prupe.6G030900' => 'ppe', 'Prupe.6G031000' => 'ppe', 'Prupe.6G031100' => 'ppe', 'Psat0s172g0040' => 'psa', 'Psat0s172g0120' => 'psa', 'Psat1g171760' => 'psa', 'Psat2g008880' => 'psa', 'Psat5g105560' => 'psa', 'Psat5g105760' => 'psa', 'PSO017G1569' => 'pso', 'PSO017G4708' => 'pso', 'PSO573G0012' => 'pso', 'PSO675G3882' => 'pso', 'QL04p066294' => 'qlo', 'QL04p066308' => 'qlo', 'QL04p066324' => 'qlo', 'QL04p066345' => 'qlo', 'QL04p066360' => 'qlo', 'QL04p066367' => 'qlo', 'QL04p074116' => 'qlo', 'QL04p074133' => 'qlo', 'QL04p074148' => 'qlo', 'QL04p074166' => 'qlo', 'QL04p074171' => 'qlo', 'QL04p074182' => 'qlo', 'QL04p074188' => 'qlo', 'QL04p074203' => 'qlo', 'QL04p074221' => 'qlo', 'QL04p075073' => 'qlo', 'QL04p075609' => 'qlo', 'QL04p075739' => 'qlo', 'QL04p075755' => 'qlo', 'QL05p004788' => 'qlo', 'QL05p004858' => 'qlo', 'QL05p005810' => 'qlo', 'QL05p057732' => 'qlo', 'QL05p066526' => 'qlo', 'QL05p066534' => 'qlo', 'QL05p066539' => 'qlo', 'QL05p066543' => 'qlo', 'QL08p001929' => 'qlo', 'QL08p001958' => 'qlo', 'QL08p001984' => 'qlo', 'QL08p002030' => 'qlo', 'QL08p002039' => 'qlo', 'QL08p002131' => 'qlo', 'QL08p002158' => 'qlo', 'QL08p002202' => 'qlo', 'QL08p002232' => 'qlo', 'QL08p002242' => 'qlo', 'QL08p002253' => 'qlo', 'QL08p002290' => 'qlo', 'QL08p002295' => 'qlo', 'QL08p002326' => 'qlo', 'QL08p002331' => 'qlo', 'QL08p005455' => 'qlo', 'QL12p009146' => 'qlo', 'QL12p009157' => 'qlo', 'RcHm_v2.0_Chr2g0155451' => 'rch', 'RcHm_v2.0_Chr2g0155471' => 'rch', 'RcHm_v2.0_Chr3g0484311' => 'rch', 'RcHm_v2.0_Chr5g0000231' => 'rch', 'RcHm_v2.0_Chr5g0042661' => 'rch', 'RcHm_v2.0_Chr5g0042671' => 'rch', 'RcHm_v2.0_Chr5g0075281' => 'rch', 'RcHm_v2.0_Chr5g0075291' => 'rch', 'RcHm_v2.0_Chr5g0075321' => 'rch', 'RcHm_v2.0_Chr5g0075331' => 'rch', 'Sabra01G0038000' => 'sbr', 'Sabra03G0090300' => 'sbr', 'Sabra06G0001900' => 'sbr', 'Sabra14G0130500' => 'sbr', 'Sabra16G0006600' => 'sbr', 'Sabra16G0317700' => 'sbr', 'Sabra16G0317800' => 'sbr', 'SalBow1G7246' => 'sbo', 'SalBow5G0011' => 'sbo', 'SalBow5G4967' => 'sbo', 'SalBow6G0242' => 'sbo', 'SalBow8G2374' => 'sbo', 'SalBow8G2786' => 'sbo', 'SalBow8G3635' => 'sbo', 'SalBow8G3675' => 'sbo', 'SalBow8G4274' => 'sbo', 'SalBow8G4609' => 'sbo', 'SalBow8G4938' => 'sbo', 'SalBow8G5025' => 'sbo', 'SalBow8G5506' => 'sbo', 'Sc11g0006740' => 'sci', 'Sc11g0006750' => 'sci', 'Sed0002303' => 'sed', 'SGA_v2.0_scaffold4G02124' => 'sas', 'Solyc07g056180.2' => 'sly', 'Solyc07g056190.3' => 'sly', 'Solyc07g056200.3' => 'sly', 'Solyc07g065927.1' => 'sly', 'Solyc12g011150.1' => 'sly', 'Sopen07g029540' => 'spe', 'Sopen07g029550' => 'spe', 'Sopen12g006510' => 'spe', 'Sopen12g007560' => 'spe', 'Sp2g12500' => 'spa', 'Sp2g18640' => 'spa', 'Sp3g06540' => 'spa', 'Sp3g18210' => 'spa', 'TAR371G0879' => 'tar', 'TAR626G0368' => 'tar', 'TAR626G1783' => 'tar', 'TAR627G0556' => 'tar', 'TAR629G0096' => 'tar', 'TAR629G2544' => 'tar', 'THA.LOC104798810' => 'tha', 'THA.LOC104806273' => 'tha', 'THA.LOC104810216' => 'tha', 'THA.LOC104817836' => 'tha', 'THA.LOC104822446' => 'tha', 'Thecc.01G201000' => 'tca', 'Thecc.07G006100' => 'tca', 'Thecc.07G006200' => 'tca', 'Thecc.07G006300' => 'tca', 'Thecc.07G006400' => 'tca', 'Thecc.07G019700' => 'tca', 'Thecc.07G019800' => 'tca', 'Thecc.09G251800' => 'tca', 'Thhalv10021695m.g' => 'esa', 'TPR.G10197' => 'tpr', 'TPR.G10472' => 'tpr', 'TPR.G10613' => 'tpr', 'TPR.G10635' => 'tpr', 'TPR.G14168' => 'tpr', 'TPR.G17672' => 'tpr', 'TPR.G27426' => 'tpr', 'TPR.G31615' => 'tpr', 'TPR.G33738' => 'tpr', 'TWI36G0980' => 'twi', 'TWI36G1096' => 'twi', 'TWI36G1369' => 'twi', 'TWI63G0143' => 'twi', 'TWI75G1832' => 'twi', 'unitig_699.g19600' => 'ugi', 'vmacro11625' => 'vma', 'vmacro12044' => 'vma', 'vmacro12045' => 'vma', 'vmacro12046' => 'vma', 'vmacro12047' => 'vma', 'vmacro12048' => 'vma', 'vmacro12049' => 'vma', 'vmacro12050' => 'vma', 'vmacro12051' => 'vma', 'vmacro17374' => 'vma', 'VMungo0464G1890' => 'vmu', 'VMungo0647G0876' => 'vmu', 'VMungo0647G1502' => 'vmu', 'VMungo0647G1590' => 'vmu', 'Zm00001eb080130' => 'zma', 'Zm00001eb080150' => 'zma', 'Zm00001eb080160' => 'zma', 'Zm00001eb080170' => 'zma', 'Zm00001eb080180' => 'zma', 'Zm00001eb080210' => 'zma', 'Zm00001eb080220' => 'zma', 'Zm00001eb080230' => 'zma', 'Zm00001eb245420' => 'zma', 'Zm00001eb245460' => 'zma', 'Zm00001eb245480' => 'zma', 'Zm00001eb245490' => 'zma', 'Zm00001eb245520' => 'zma', 'Zm00001eb308670' => 'zma', 'Zm00001eb424580' => 'zma' ) $gf_id = 'HOM05D000913' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000913' ) $data_identifier = 'HOM05D000913' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 3, 'ach' => (int) 3, 'amhyb' => (int) 1, 'aly' => (int) 5, 'aox' => (int) 11, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 2, 'bca' => (int) 9, 'bol' => (int) 4, 'bra' => (int) 5, 'can' => (int) 1, 'cansat' => (int) 6, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 2, 'ccan' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 6, 'cil' => (int) 15, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 1, 'camsi' => (int) 5, 'dca' => (int) 12, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 15, 'fan' => (int) 17, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 20, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 9, 'hma' => (int) 2, 'sun' => (int) 4, 'lal' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 11, 'mbi' => (int) 26, 'mdo' => (int) 15, 'mtr' => (int) 13, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 11, 'oeu' => (int) 10, 'osa' => (int) 11, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 15, 'psa' => (int) 6, 'pso' => (int) 4, 'qlo' => (int) 45, 'rch' => (int) 10, 'sbr' => (int) 7, 'sbo' => (int) 13, 'sci' => (int) 2, 'sed' => (int) 1, 'sas' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 1, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 1, 'vma' => (int) 10, 'vmu' => (int) 4, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1